Faunus
latest
Introduction
Installing
Development
Running Simulations
Topology
Energy
Monte Carlo Moves
Langevin Dynamics
Analysis
Faunus
Welcome to Faunus!
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Welcome to Faunus!
Introduction
About
Quick Start
Getting Help
Installing
Conda
Docker
Build from source code
Development
Code Style
Creating a conda package (development usage)
Running Simulations
Input and Output
Restarting
Diagnostics
Parallelization
Python Interface
Topology
Global Properties
Atom Properties
Molecule Properties
Initial Configuration
Equilibrium Reactions
Energy
Infinite and NaN Energies
External Pressure
Nonbonded Interactions
Parallel summation
Electrostatics
Pair Potentials
Custom External Potential
Custom Group-Group Potential
Bonded Interactions
Geometrical Confinement
Solvent Accessible Surface Area
Penalty Function
Constraining the system
Monte Carlo Moves
Translation and Rotation
Internal Degrees of Freedom
Parallel Tempering
Volume Move
Gibbs Ensemble (unstable)
Reactive Canonical Monte Carlo
Replay
Langevin Dynamics
Analysis
Density
Structure
Charge Properties
Reaction Coordinate
System
Perturbations
Positions and Trajectories
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